Main Figures¶
This section summarizes the main figure-related notebooks provided in the STEER repository.
These notebooks are useful if you want to:
- understand how key analyses in the STEER study were performed
- inspect figure-oriented workflows in more detail
- reproduce or adapt specific analysis panels for your own work
Available notebooks¶
The current main-figure notebook set includes:
- Figure 2 Notebook
- Figure 3 Notebook
- Figure 4 Notebook
- Spatial Mouse Placentation Run: a compact end-to-end run configured for the mouse placentation dataset used in the main figure workflow
- scRNA Mouse Erythroid Run: a compact end-to-end run configured for a single-cell mouse erythroid lineage dataset
- Figure 5 Notebook
Each notebook is available directly as a page in this documentation site through the navigation menu.
Original repository location¶
The original files are stored under:
tutorials/NoteBook_Main_Figures/
GitHub links:
- Figure2.ipynb
- Figure3.ipynb
- Figure4.ipynb
- run_Spatial_MousePlacentation.ipynb
- run_scRNA_Erythorid_slim.ipynb
- Figure5.ipynb
Related resources¶
Associated figure-oriented data resources are stored under:
tutorials/NoteBook_Main_Figures/Data4NoteBook/
GitHub link:
Suggested usage¶
A practical sequence is:
- Start with the Quick Start Notebook to understand the standard workflow
- Then open the figure notebooks to inspect paper-level analyses
- Use the original repository folders if you need the complete surrounding context or auxiliary files